open-source software package niftyreg Search Results


open-source software package niftyreg  (SourceForge net)
90
SourceForge net open-source software package niftyreg
Open Source Software Package Niftyreg, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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image registration toolkit niftyreg  (SourceForge net)
90
SourceForge net image registration toolkit niftyreg
Compared methods with their corresponding addresses.
Image Registration Toolkit Niftyreg, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/image registration toolkit niftyreg/product/SourceForge net
Average 90 stars, based on 1 article reviews
image registration toolkit niftyreg - by Bioz Stars, 2026-03
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nifty-seg open source implementation  (SourceForge net)
90
SourceForge net nifty-seg open source implementation
Compared methods with their corresponding addresses.
Nifty Seg Open Source Implementation, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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nifty-seg open source implementation - by Bioz Stars, 2026-03
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niftyseg  (SourceForge net)
90
SourceForge net niftyseg
Compared methods with their corresponding addresses.
Niftyseg, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/niftyseg/product/SourceForge net
Average 90 stars, based on 1 article reviews
niftyseg - by Bioz Stars, 2026-03
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matlab 2019b  (MathWorks Inc)
90
MathWorks Inc matlab 2019b
Compared methods with their corresponding addresses.
Matlab 2019b, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/matlab 2019b/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
matlab 2019b - by Bioz Stars, 2026-03
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image registration software  (SourceForge net)
90
SourceForge net image registration software
Compared methods with their corresponding addresses.
Image Registration Software, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/image registration software/product/SourceForge net
Average 90 stars, based on 1 article reviews
image registration software - by Bioz Stars, 2026-03
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mim mim version 6.4 or higher  (MIM Software Inc)
90
MIM Software Inc mim mim version 6.4 or higher
Compared methods with their corresponding addresses.
Mim Mim Version 6.4 Or Higher, supplied by MIM Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/mim mim version 6.4 or higher/product/MIM Software Inc
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mim mim version 6.4 or higher - by Bioz Stars, 2026-03
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smartadapt eclipse version 13 or higher  (Varian Medical)
90
Varian Medical smartadapt eclipse version 13 or higher
Change in spinal cord volume compared to original planning CT. Eclipse <t>SmartAdapt</t> ® method showed a statistically significant expansion of spinal cord by 9.56% compared to original plan. CT: Computed tomography, CBCT: Cone-beam computed tomography
Smartadapt Eclipse Version 13 Or Higher, supplied by Varian Medical, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/smartadapt eclipse version 13 or higher/product/Varian Medical
Average 90 stars, based on 1 article reviews
smartadapt eclipse version 13 or higher - by Bioz Stars, 2026-03
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external-surrogate-based surface photogrammetry system  (Vision RT Ltd)
90
Vision RT Ltd external-surrogate-based surface photogrammetry system
Change in spinal cord volume compared to original planning CT. Eclipse <t>SmartAdapt</t> ® method showed a statistically significant expansion of spinal cord by 9.56% compared to original plan. CT: Computed tomography, CBCT: Cone-beam computed tomography
External Surrogate Based Surface Photogrammetry System, supplied by Vision RT Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/external-surrogate-based surface photogrammetry system/product/Vision RT Ltd
Average 90 stars, based on 1 article reviews
external-surrogate-based surface photogrammetry system - by Bioz Stars, 2026-03
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7t preclinical mri scanner  (Bruker Corporation)
90
Bruker Corporation 7t preclinical mri scanner
Change in spinal cord volume compared to original planning CT. Eclipse <t>SmartAdapt</t> ® method showed a statistically significant expansion of spinal cord by 9.56% compared to original plan. CT: Computed tomography, CBCT: Cone-beam computed tomography
7t Preclinical Mri Scanner, supplied by Bruker Corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/7t preclinical mri scanner/product/Bruker Corporation
Average 90 stars, based on 1 article reviews
7t preclinical mri scanner - by Bioz Stars, 2026-03
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feraheme  (AMAG Pharmaceuticals)
90
AMAG Pharmaceuticals feraheme
KEY RESOURCES TABLE
Feraheme, supplied by AMAG Pharmaceuticals, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/feraheme/product/AMAG Pharmaceuticals
Average 90 stars, based on 1 article reviews
feraheme - by Bioz Stars, 2026-03
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algorithms matlab mathworks rrid scr 001622 spm12 ashburner  (Bruker Corporation)
99
Bruker Corporation algorithms matlab mathworks rrid scr 001622 spm12 ashburner
KEY RESOURCES TABLE
Algorithms Matlab Mathworks Rrid Scr 001622 Spm12 Ashburner, supplied by Bruker Corporation, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 99 stars, based on 1 article reviews
algorithms matlab mathworks rrid scr 001622 spm12 ashburner - by Bioz Stars, 2026-03
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Image Search Results


Compared methods with their corresponding addresses.

Journal: Scientific Reports

Article Title: Accurate Learning with Few Atlases (ALFA): an algorithm for MRI neonatal brain extraction and comparison with 11 publicly available methods

doi: 10.1038/srep23470

Figure Lengend Snippet: Compared methods with their corresponding addresses.

Article Snippet: All registration steps were carried out using the open-source image registration toolkit NiftyReg ( https://sourceforge.net/projects/niftyreg ), using default settings.

Techniques:

Change in spinal cord volume compared to original planning CT. Eclipse SmartAdapt ® method showed a statistically significant expansion of spinal cord by 9.56% compared to original plan. CT: Computed tomography, CBCT: Cone-beam computed tomography

Journal: Journal of Medical Physics

Article Title: Comparison of Three Commercial Methods of Cone-Beam Computed Tomography-Based Dosimetric Analysis of Head-and-Neck Patients with Weight Loss

doi: 10.4103/jmp.jmp_7_22

Figure Lengend Snippet: Change in spinal cord volume compared to original planning CT. Eclipse SmartAdapt ® method showed a statistically significant expansion of spinal cord by 9.56% compared to original plan. CT: Computed tomography, CBCT: Cone-beam computed tomography

Article Snippet: Recent studies that estimated dose to OARs and PTVs using CBCT images utilized either SmartAdapt (Eclipse Version 13 or higher, Varian Medical Systems, Palo Alto, CA, USA)[ ] or MIM[ ] (MIM version 6.4 or higher, MIM Software Inc., Cleveland, OH, USA) or NiftyReg,[ ] an open-source registration package.

Techniques: Computed Tomography

Change in maximum cord dose compared to the original planning CT. All changes were statistically significant with average increase of 3.85%, 6.77%, 4.09%, and 0.78%, respectively, for repeat CT-, Eclipse SmartAdapt ® -, VelocityAI™-, and PerFraction™-based methods. CT: Computed tomography, CBCT: Cone-beam computed tomography

Journal: Journal of Medical Physics

Article Title: Comparison of Three Commercial Methods of Cone-Beam Computed Tomography-Based Dosimetric Analysis of Head-and-Neck Patients with Weight Loss

doi: 10.4103/jmp.jmp_7_22

Figure Lengend Snippet: Change in maximum cord dose compared to the original planning CT. All changes were statistically significant with average increase of 3.85%, 6.77%, 4.09%, and 0.78%, respectively, for repeat CT-, Eclipse SmartAdapt ® -, VelocityAI™-, and PerFraction™-based methods. CT: Computed tomography, CBCT: Cone-beam computed tomography

Article Snippet: Recent studies that estimated dose to OARs and PTVs using CBCT images utilized either SmartAdapt (Eclipse Version 13 or higher, Varian Medical Systems, Palo Alto, CA, USA)[ ] or MIM[ ] (MIM version 6.4 or higher, MIM Software Inc., Cleveland, OH, USA) or NiftyReg,[ ] an open-source registration package.

Techniques: Computed Tomography

Need to replan based on maximum dose to cord being ≥45 Gy ( n =17)

Journal: Journal of Medical Physics

Article Title: Comparison of Three Commercial Methods of Cone-Beam Computed Tomography-Based Dosimetric Analysis of Head-and-Neck Patients with Weight Loss

doi: 10.4103/jmp.jmp_7_22

Figure Lengend Snippet: Need to replan based on maximum dose to cord being ≥45 Gy ( n =17)

Article Snippet: Recent studies that estimated dose to OARs and PTVs using CBCT images utilized either SmartAdapt (Eclipse Version 13 or higher, Varian Medical Systems, Palo Alto, CA, USA)[ ] or MIM[ ] (MIM version 6.4 or higher, MIM Software Inc., Cleveland, OH, USA) or NiftyReg,[ ] an open-source registration package.

Techniques:

Need to replan based on dose to 95% of planning target volume 66 being <66 Gy ( n =10)

Journal: Journal of Medical Physics

Article Title: Comparison of Three Commercial Methods of Cone-Beam Computed Tomography-Based Dosimetric Analysis of Head-and-Neck Patients with Weight Loss

doi: 10.4103/jmp.jmp_7_22

Figure Lengend Snippet: Need to replan based on dose to 95% of planning target volume 66 being <66 Gy ( n =10)

Article Snippet: Recent studies that estimated dose to OARs and PTVs using CBCT images utilized either SmartAdapt (Eclipse Version 13 or higher, Varian Medical Systems, Palo Alto, CA, USA)[ ] or MIM[ ] (MIM version 6.4 or higher, MIM Software Inc., Cleveland, OH, USA) or NiftyReg,[ ] an open-source registration package.

Techniques:

Need to replan based on dose to 95% low-dose planning target volume being <54 Gy (n =16)

Journal: Journal of Medical Physics

Article Title: Comparison of Three Commercial Methods of Cone-Beam Computed Tomography-Based Dosimetric Analysis of Head-and-Neck Patients with Weight Loss

doi: 10.4103/jmp.jmp_7_22

Figure Lengend Snippet: Need to replan based on dose to 95% low-dose planning target volume being <54 Gy (n =16)

Article Snippet: Recent studies that estimated dose to OARs and PTVs using CBCT images utilized either SmartAdapt (Eclipse Version 13 or higher, Varian Medical Systems, Palo Alto, CA, USA)[ ] or MIM[ ] (MIM version 6.4 or higher, MIM Software Inc., Cleveland, OH, USA) or NiftyReg,[ ] an open-source registration package.

Techniques:

KEY RESOURCES TABLE

Journal: Neuron

Article Title: Repeated hippocampal seizures lead to brain-wide reorganization of circuits and seizure propagation pathways

doi: 10.1016/j.neuron.2021.10.010

Figure Lengend Snippet: KEY RESOURCES TABLE

Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Bacterial and virus strains rAAV5-CaMKII-hChR2(H134R)-EYFP University of North Carolina vector core Lot AV4316LM Chemicals, peptides, and recombinant proteins Feraheme AMAG Pharmaceuticals NDC Code 59338-775-01, 59338-775-10 Experimental models: Organisms/strains Sprague-Dawley Charles River Strain Code #001; RRID:RGD_734476 Software and algorithms MATLAB MathWorks RRID:SCR_001622 SPM12 Ashburner et al., 2014 RRID:SCR_007037 NiftyReg Modat et al., 2010 , 2014 RRID:SCR_006593 Other 7T Preclinical MRI Scanner Bruker BioSpec series; Stanford Center for Innovation in In-Vivo Imaging Open in a separate window KEY RESOURCES TABLE.

Techniques: Virus, Plasmid Preparation, Recombinant, Software, In Vivo Imaging

KEY RESOURCES TABLE

Journal: Neuron

Article Title: Repeated hippocampal seizures lead to brain-wide reorganization of circuits and seizure propagation pathways

doi: 10.1016/j.neuron.2021.10.010

Figure Lengend Snippet: KEY RESOURCES TABLE

Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Bacterial and virus strains rAAV5-CaMKII-hChR2(H134R)-EYFP University of North Carolina vector core Lot AV4316LM Chemicals, peptides, and recombinant proteins Feraheme AMAG Pharmaceuticals NDC Code 59338-775-01, 59338-775-10 Experimental models: Organisms/strains Sprague-Dawley Charles River Strain Code #001; RRID:RGD_734476 Software and algorithms MATLAB MathWorks RRID:SCR_001622 SPM12 Ashburner et al., 2014 RRID:SCR_007037 NiftyReg Modat et al., 2010 , 2014 RRID:SCR_006593 Other 7T Preclinical MRI Scanner Bruker BioSpec series; Stanford Center for Innovation in In-Vivo Imaging Open in a separate window KEY RESOURCES TABLE.

Techniques: Plasmid Preparation, Recombinant, Software, In Vivo Imaging